.. _pheno_prob_file_format:

Phenotype probability file
==========================

Output file
~~~~~~~~~~~

The ``.pheno_prob.txt`` file contains *phenotype probabilities* for each individual.

.. TODO: remove the empty lines in the output files? (1+k will be k in text!)

There are ``1+k`` lines per individual
(an empty line and ``k`` lines with probabilities for ``0:k`` phenotypes).
The first value in each line is the individual ID.
The remaining values are phenotype probabilities
(current phenotype functionality works only with one locus and one trait).

Example with four individuals and two phenotype states for a binary trait:

::

  id1 0.9000
  id1 0.1000

  id2 0.9000
  id2 0.1000

  id3 0.2453
  id3 0.7547

  id4 0.9000
  id4 0.1000