Dosage file

Output file

The .dosage.txt file contains expected dosages for the alternative allele for each individual. These expected dosages are obtained by (1) taking the allele dosages (0, 1, and 2) of each individual at each locus, (2) weighting them with corresponding genotype probabilities, and (3) summing the weighted dosages. There is one line per individual. The first value in each line is the individual ID. The remaining values are allele dosages at each locus. These values will be between 0 and 2, inclusive (see the note on encoding alleles and genotypes).

Example with four individuals and four loci:

id1 0.2089 1.7820 1.4725 0.0000
id2 1.0000 1.0000 1.0000 0.9999
id3 0.8293 1.1329 1.9999 0.0000
id4 0.0001 1.9999 1.0000 0.0000