AlphaPeel

User Manual

  • Introduction
  • Getting Started
  • Usage
  • File formats
    • Data file formats
      • Pedigree file
      • Genotype file
      • Dosage file
      • Sequence allele read counts file
      • Haplotype file
      • Phenotype file
      • Genotype probability file
      • Phased genotype probabilities file
      • Binary Plink file
        • Input file
      • Map file
      • Segregation file
      • Phenotype probability file
    • Parameter file formats
  • Changelog

Developer Manual

  • Algorithm Overview
  • Contribution and Development Guide

Table of Contents

  • AlphaPeel
AlphaPeel
  • File formats
  • Data file formats
  • Binary Plink file
  • View page source

Binary Plink file

Input file

This file is supported through the package AlphaPlinkPython, which can be installed via pip, but is only stable for Linux. There are known issues with this package, so we do not advocate its use at the moment. The pedigree supplied by the .fam file will be used if a pedigree file is not supplied. Otherwise, the pedigree file will be used and the .fam file will be ignored.

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© Copyright 2019, Andrew Whalen.

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