Phenotype probability file

Output file

The .pheno_prob.txt file contains phenotype probabilities for each individual.

There are 1+k lines per individual (an empty line and k lines with probabilities for 0:k phenotypes). The first value in each line is the individual ID. The remaining values are phenotype probabilities (current phenotype functionality works only with one locus and one trait).

Example with four individuals and two phenotype states for a binary trait:

id1 0.9000
id1 0.1000

id2 0.9000
id2 0.1000

id3 0.2453
id3 0.7547

id4 0.9000
id4 0.1000